Meetings and Events
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Upcoming meetings
- In Silico Analysis of Proteins. Celebrating the 20th Anniversary of Swiss-Prot
- Jul 30- August 4, 2006, Fortaleza, Brazil.
- http://www.swissprot20.org/
- Attending: Michael Ashburner, Suzanna Lewis
- ISMB, 2006
- August 6-10, 2006, Fortaleza, Brazil.
- http://ismb2006.cbi.cnptia.embrapa.br/
- Attending: Michael Ashburner, Suzanna Lewis (Keynote speaker for Bio-ontologies SIG)
- IEEE Computational Systems Bioinformatics, 2006
- August 14-18, 2006. Stanford University
- http://www.lifesciencessociety.org/CSB2006/index.html
- Attending: Mark Musen (Keynote speaker), rest of Stanford group (tutorial in bioontologies/semantic web)
- Anatomy Ontology Workshop
- September 8-9, 2006, Seattle
- information on the Anatomy Ontology Workshop
- Attending: Michael Ashburner, Melissa Haendel, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, David Sutherland, Monte Westerfield
- American Society of Human Genetics
- October 9-13, 2006, New Orleans, LA
- http://genetics.faseb.org/genetics/ashg/menu-annmeet.shtml
- Presentation to find collaborators, also ontology workshop
- Fall NCBO Project Meeting
- Oct. 23-25, 2006, Stanford
- All Hands meeting
- Advisory Comm. & NIH Program & Science officers invited
- Workshop on Ontology of Diseases
- In association with FOIS 2006 (Formal Ontology and Information Systems)
- November 6-7, 2006, John Hopkins University, Baltimore
- information on the Disease Ontology Workshop
- Attending: Werner Ceusters, Christopher Chute, Suzanna Lewis, Chris Mungall, Fabian Neuhaus, Nigam Shah, Barry Smith, Monte Westerfield
- PATO meeting
- November 30-December 2, 2006, Stanford University Clark Center
- information about the PATO Meeting
- Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield
2007
- Ontology Interoperability in Biomedicine
- March 27-30, 2007, Dagstuhl, Germany
- Invitation only
- Workshop on Clinical Trial Ontology
- May 16-17 2007, venue TBD
- information about Clinical Trial Ontology workshop
- Dagstuhl Seminarium: Ontologies and Text Mining for Life Sciences
- July 23-27, 2007: Dagstuhl, Germany
- Organizers: Ulf Leser, Dietrich Rebholz-Schuhmann & Michael Ashburner
- Attending: Michael Ashburner
- http://www.dagstuhl.de/07301
- Spatial reasoning over ontologies
- Fall 2007?
- Ontology Training workshops for training workshops
- Aug. 2007?, Buffalo?
- NECTAR Clinical Research Ontology Workshop
- 2007?, Bethesda?
- All NCBCs Ontology workshop
- 2007? with Andreas Califano, Columbia, NY?
- Phenotype Ontology (Upper Level) workshop
- ?
Past meetings
- NCBC All Hands Meeting
- July 17-19, 2006, NIH, Bethesda, MD
- Attending: Michael Ashburner, James Buntrock, Chris Callendar, Simona Carini, Louis Goldberg, Deborah McGuinness, Chris Mungall,Mark Musen, Fabian Neuhaus, Daniel Rubin, Nigam Shah, Barry Smith, Nicole Washington, Monte Westerfield
- http://www.bisti.nih.gov/ahm2006/
- Ontology: A Vision for the Future and Its Realization Dissemination Event
- Organizers: Mark Musen, Barry Smith
- Core 1 & 2 Project Meeting
- June 27-28, 2006, Berkeley
- Attending: Julie Moseley, Lynn Murphy, Mark Musen, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Christopher Chute, Harold Solbrig (Mayo); Margaret-Anne Storey (UVic); Sherri De Coronado (NIH)
- Working plan for core 1 & 2 goals
- Core 1 & 2 Meeting
- June 9, 2006, Berkeley
- Attending: Dilvan Moreira, Lynn Murphy, Daniel Rubin, Nigam Shah, Archana Vembakam (Stanford); Suzanna Lewis, Chris Mungall, ShengQiang Shu, Nicole Washington (Berkeley); James Buntrock, Harold Solbrig (Mayo by phone); Chris Callendar (UVic by phone)
- Training Course in Biomedical Ontologies
- http://ontology.buffalo.edu/06/os2/index.html
- May 21-24, 2006, Schloss Dagstuhl, Germany
- Attending: Werner Ceusters, Mark Musen, Barry Smith
- NSF/RCN workshop on ontology and phylogeny
- May 21-24, St. Louis
- Attending: Michael Ashburner, Suzanna Lewis, Monte Westerfield
- Phenotype Annotation Meeting
- May 17-20, Hinxton, UK
- Attending: Michael Ashburner, Mark Gibson, George Gkoutos, Suzanna Lewis, Gillian Millburn, Chris Mungall, Fabian Neuhaus, Erik Segerdell, Nigam Shah, Monte Westerfield
- PATO meeting agenda
- Fish Evolutionary Biology Working Group Meeting
- April 9-11, National Evolutionary Synthesis Center (NESCent), Durham, NC
- Attending: Mark Gibson,Paula Mabee, Chris Mungall, Monte Westerfield
- Gene Ontology Workshop
- March 31-April 3, 2006, St. Croix
- Attending: Michael Ashburner, Suzanna Lewis, Chris Mungall, Barry Smith
- Bio-IT LifeSciences Conference
- April 3-6, 2006, Boston, MA
- http://www.lifesciencesexpo.com/live/26/
- Speaker: Michael Ashburner, Ben Franklin Award Lecture.
- Workshop on Ontology of Images
- March 24-25, 2006, Stanford University
- CCB NCBC and others with biomedical image ontologies
- [Workshop on Ontology of Images | info on Ontology of Images workshop]
- Attending: Suzanna Lewis, Chris Mungall, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith, Kaushtubh Supekar
- Immunology Ontology Workshop: NIAID
- March 21-22, 2006, Gaitherburg, MD
- Attending: Suzanna Lewis (speaker), Mark Musen (Session chair), Barry Smith
- Semantic Technology Conference
- March 6-9, 2006, San Jose, California
- http://www.semantic-conference.com/
- Attending: Deborah McGuinness(keynote, tutorial), Mark Musen (speaker), Daniel Rubin, Kaustubh Superkar(speaker)
- NIH NCRR Animal Models workshop
- March 6-7, 2006, Bethesda, MD
- Attending: Monte Westerfield
- cBio Project Meeting
- March 2-4, 2006, Stanford University
- Agenda
- http://www.smi.stanford.edu/research/cbio/cbio_meeting.html
- Entire project, NIH Program & Lead Science officers
- BIRN ontology workshop
- February 28-March 1, 2006, Stanford
- Attending: Christopher Chute, Suzanna Lewis, Mark Musen, Daniel Rubin, Nigam Shah, Barry Smith
- NLM vocabulary collection and distribution meeting
- February 27-28, 2006, NLM, Washington, DC
- Attending: James Buntrock, Christopher Chute, Tom Johnson, Chris Mungall, Deepak Sharma, Harold Solbrig
- NIAID meeting
- February, 2006, DC
- Attending: Mark Musen
- cBio Phenotype Annotation tool specification
- February 21-23, 2006, LBNL
- Attending: Melissa Haendel, Sierra Taylor (ZFIN); John Day-Richter, Mark Gibson, Suzanna Lewis, Chris Mungall, ShengQiang Shu (Berkeley)
- Mini-Syposium on Semantic Enrichment of Scientific Literature
- February 20, 2006 at the European Bioinformatics Institute, Hinxton
- Attending: Michael Ashburner (speaker)
- cBio OBD specification
- February 17, 2006, LBNL
- Attending: Ben Olasov, Ida Sim (UCSF); Mark Gibson, Suzanna Lewis, Sima Misra, Chris Mungall, ShengQiang Shu (Berkeley); Daniel Rubin (Stanford-by phone)
- FuGO meeting
- February 13-15, 2006, Penn, Philadelphia, PA
- http://fugo.sourceforge.net/news/index.php
- Attending: Barry Smith
- Fourth Semantic Interoperability for E-Government Conference
- February 9-10, 2006, MITRE, McLean, VA
- http://colab.cim3.net/cgi-bin/wiki.pl?FourthSemanticInteroperabilityforEGovernmentConference_2006_2_0910
- Attending: Barry Smith
- NIAID BRC3 and Inter Operability Working Group meeting
- February 6-7, 2006, Philadelphia, PA
- http://www.niaid.nih.gov/dmid/genomes/brc/brc3.htm
- Attending: Suzi, Barry
- PharmGKB and cBiO meeting
- January 31, 2006, Stanford
- Attending: Daniel (Stanford), Suzi & Sima (Berkeley), Teri Klein, Tina Boussard, Mark Woon, Russ Altman (PharmGKB)
- Pacific Symposium on Biocomputing, 2006
- Maui, HI, January 2-6, 2006
- Michael Ashburner, Keynote.
- http://psb.stanford.edu/
- NCBC Meeting
- Dec. 15-16, NIH
- Attending: Mark, Suzi, Monte
- Introducting new NCBCs to each other and NIH staff
- Phenotype Annotation Meeting
- December 11-12, 2005, Asilomar conference center
- Attending
- From ZFIN: Monte Westerfield, Erik Segerdell, Melissa Haendel, Paula Mabee
- From FlyBase: Gillian Millburn
- From Berkeley: Suzi Lewis, Chris Mungall, Mark Gibson
- From Victoria: Peggy Storey, Chris Callendar, Sean Falconer
- Define requirements of phenotype annotation tools
- International Biocurator Meeting
- Asilomar, December 8-11, 2005
- http://biocurator.org/intnlbiocurator.html
- Attending: Monte Westerfield (speaker), Chris Mungall (speaker), Sima
- National Bioinformatics Network, South Africa
- December 2, 2005, University of Cape Town.
- Michael Ashburner, Keynote talk at Official Opening.
- Phenotype Ontology Content Workshop
- Nov. 19-20, 2005, CSHL
- Attending
- From cBio: Mark, Nigam, Suzi, Chris, John, Michael, George, Monte, Erik (not Barry)
- Jonathan Bard, XSPAN
- Thomas Bittner, Lou Goldberg, Fabian Neuhaus, NCOR
- Judy Blake, MGD
- Mike Cherry, Jane Lomax, GO
- Rex Chisolm, Pascale Gaudet, NuGene project
- Rachel Drysdale, FlyBase
- Akhilesh Pandey, OMIM
- Anne Kwitek, RGD
- Yves Lussier, SNOMED
- Media:PhenoAgenda.doc
- Stanford/Mayo/Berkeley Meetings
- Nov. 21, 10am-3pm, Stanford; Nov. 22, 10am-3pm, Berkeley
- Attending
- From Stanford: Mark, Daniel, Archana, Lynn, Nigam
- From Berkeley: Suzi, Chris, Sima, Shu, Nomi
- From Mayo: Deepak, Harold, Jim
- Forbes Dewey Meeting
- Late October, MIT
- Michael Ashburner, chair
- Goal to see if anonymous foundation would pay for ontology content unification, standards, collaboration, etc.
- Genome Informatics Meeting
- Oct. 28-Nov. 1, CSHL
- Suzi will gave presentation on cBio.
- Birds of a feather sessions, one on ontology.
- Workshop on Bio-Ontologies
- October 28, 2005, Buffalo, NY
- http://ontology.buffalo.edu/05/bio-ontologies.pdf
- Presenting: Suzi, Frank Hartel, Sumi Yoshikawa, Olivier Bodenreider, David Hill
- Training session on making ontologies better
- 1st International Annual Conference, Brazilian Association for Bioinformatics and Computational Biology, Caxambu, Brazil
- October, 2006
- Michael Ashburner, Keynote.
- Applied Biosystems Inc., Science Meeting, Asilomar
- September 2005
- Michael Ashburner, Keynote.
- MGED8, Bergen
- September, 2005
- Michael Ashburner, Keynote