Difference between revisions of "Main Page"

From NCBO Wiki
Jump to navigation Jump to search
(190 intermediate revisions by 48 users not shown)
Line 1: Line 1:
−
Welcome to the cBiO WIKI!<br>
+
Welcome to the '''National Center for Biomedical Ontology (NCBO) public wiki'''. This wiki provides user guides and technical documentation for software developed by NCBO.
−
This is a private WIKI, accessible only to members of cBiO. All material posted here will be available only to members of our Center.
 
  
−
=== cBio Links ===
+
Note that as the NCBO project funding has ended, documentation for some projects or project details (n.b., NCBO BioPortal details) may be out of date. Pease send email to the BioPortal Support List
−
*[http://www.bioontology.org/ cBio Home page]
 
  
−
*[http://datebook.stanford.edu:88/cBiO_Calendar cBio calendar]
+
Please visit our [http://www.bioontology.org main site] for more information about NCBO.
  
−
=== cBio Work Materials===
 
  
−
*[[Teleconference Instructions]]
+
__TOC__
  
−
*[[Meeting Agendas and Minutes]]
+
== Software ==
 +
To follow is a list of software developed and maintained by NCBO:
  
−
*[[Meetings and Events]]
+
* [https://bioportal.bioontology.org BioPortal] - A web-based application for accessing and sharing biomedical ontologies
 +
* [https://data.bioontology.org/ BioPortal REST API] - A RESTful API to access BioPortal content
 +
* [[:Category:NCBO_Virtual_Appliance|BioPortal Virtual Appliance]] - Contains BioPortal and the BioPortal REST API, runs on Linux
 +
* [http://sparql.bioontology.org/ BioPortal SPARQL Endpoint] - Access BioPortal content via SPARQL queries ''(obsolete)''
  
−
*[[Action Items]]
+
Please refer to our [[BioPortal_Release_Notes|release notes]] page for change logs.
  
−
*[[Shared Materials]]
+
== Documentation ==
  
−
*[[Evaluation Activities]]
+
* [[BioPortal Help|BioPortal]] - get help with the user interface and instructions for commonly performed tasks
 +
* [http://data.bioontology.org/documentation BioPortal REST API] - see a list of available endpoints with usage instructions
 +
* [[:Category:NCBO_Virtual_Appliance|BioPortal Virtual Appliance]] - read a getting started guide and installation instructions
 +
* [[Using_NCBO_Technology_In_Your_Project|Using NCBO technologies in your project]] - get ideas for how to employ NCBO technologies in your website or application
 +
* [[SKOSSupport|SKOS support]] - view the specifics of BioPortal's support for SKOS vocabularies
 +
* [[SPARQL_BioPortal|BioPortal SPARQL Endpoint]] - read about programmatic submission of SPARQL queries and the named graph structure
 +
* [[NCBO_Developer_Documentation|Developer documentation]]
  
−
=== NCBC Links ===
+
=== Mail Support ===
  
−
[http://www.bisti.nih.gov/ncbc/ NCBC Home page]
+
* [https://mailman.stanford.edu/mailman/listinfo/bioontology-support BioPortal Support List] - sign up to see and request community support for BioPortal
 +
* [https://mailman.stanford.edu/pipermail/bioontology-support/ BioPortal mailman email archives] - the usual mailman archive format for BioPortal support list
 +
* [http://ncbo-support.2288202.n4.nabble.com/ BioPortal nabble email archives] - BioPortal support email list archives in easier format to search and navigate
  
−
[http://wiki.na-mic.org/Wiki/index.php/SDIWG:Software_and_Data_Integration_Working_Group NCBC Software and Data Integration Working Group (SDIWG) and Centers Discussion]
+
== Ontology Development Projects ==
  
−
 
+
These are some of the ontology development projects that NCBO participated in:
−
=== Developers Area ===
+
−
*[[OBO Development]]
+
* [http://bioportal.bioontology.org/ontologies/BRO Biomedical Resource Ontology]
−
*[[OBD Development]]
+
* [http://bioportal.bioontology.org/ontologies/TMO Translational Medicine Ontology]
−
 
+
* [[NPO:Main_Page|NanoParticle Ontology]]  
−
 
+
* [http://bioportal.bioontology.org/ontologies/PATO Phenotypic Quality Ontology]
−
 
+
* [[RO:Main_Page|OBO Relations Ontology]]
−
 
+
* [[CARO:Main_Page|Common Anatomy Reference Ontology]]
−
 
+
* [[CL:Main_Page|Cell Ontology]]
−
 
+
* [[SO:Main_Page|Sequence Types and Features Ontology]]
−
 
+
* [[Disease:Main_Page|Disease Ontology]], and other ontologies pertaining to diseases and disorders
−
Please see [http://meta.wikipedia.org/wiki/MediaWiki_i18n documentation on customizing the interface]
+
* [[OCI:Main_Page|Ontology of Clinical Investigation]]
−
and the [http://meta.wikipedia.org/wiki/MediaWiki_User%27s_Guide User's Guide] for usage and configuration help.
 

Revision as of 12:58, 3 January 2018

Welcome to the National Center for Biomedical Ontology (NCBO) public wiki. This wiki provides user guides and technical documentation for software developed by NCBO.

Note that as the NCBO project funding has ended, documentation for some projects or project details (n.b., NCBO BioPortal details) may be out of date. Pease send email to the BioPortal Support List

Please visit our main site for more information about NCBO.


Software

To follow is a list of software developed and maintained by NCBO:

Please refer to our release notes page for change logs.

Documentation

Mail Support

Ontology Development Projects

These are some of the ontology development projects that NCBO participated in:

Retrieved from "https://www.bioontology.org//mediawiki/index.php?title=Main_Page&oldid=12958"