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- #REDIRECT [[PATO:Annotations]]30 bytes (3 words) - 15:11, 15 December 2008
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- * All annotations in OBD-Phenotype subset * All annotations to entities in OMIM IDspace850 bytes (126 words) - 14:34, 5 March 2008
- ...pabilities for computing the similarity between entities based on ontology annotations. OBD is flexible with respect to what kind of annotations and ontologies are used. For example:1 KB (196 words) - 13:00, 9 October 2008
- #REDIRECT [[PATO:Annotations]]30 bytes (3 words) - 15:11, 15 December 2008
- ...ssemblies and compute pipelines (the results of which are sometimes called annotations, although the word is typically only used for human-curated data). As well2 KB (318 words) - 16:15, 15 May 2006
- ...y the OBA/OBR workflow. It contains the concepts and terms used for direct annotations as well as the relations between concepts used during the semantic expansio1 KB (162 words) - 10:27, 18 September 2009
- conceptNodes <- getNodeSet(x,"/success/data/annotatorResultBean/annotations/annotationBean/concept") resultNodes <- getNodeSet(x, "/success/data/annotatorResultBean/annotations/annotationBean/context")3 KB (279 words) - 10:41, 19 December 2013
- * add new types of annotations1 KB (172 words) - 10:53, 17 October 2008
- The Sequence Ontology: A tool for the unification of genome annotations. <BR>Eilbeck K., Lewis S.E., Mungall C.J., Yandell M., Stein L., Durbin R.,1 KB (219 words) - 18:55, 25 January 2007
- '/success/data/annotatorResultBean/annotations/annotationBean/concept'); '/success/data/annotatorResultBean/annotations/annotationBean/context');3 KB (415 words) - 09:00, 15 September 2011
- '''Minimal requirement for term annotations in the CTO (metadata)'''2 KB (279 words) - 08:35, 15 March 2007
- '''Minimal requirement for term annotations in the CTO (metadata)'''2 KB (285 words) - 11:58, 6 July 2007
- ''To automatically recommend an ontology to use for semantic annotations'' ...tic annotation based approach and scores the ontologies according to those annotations. The recommender service uses the [[Annotator Web service]] . The prototype4 KB (489 words) - 13:28, 12 September 2011
- ...) of full page text articles, for which you wish to retrieve and parse the annotations. Assuming it takes about 20 second to parse and organize the response for e ...r BioPortal users. If the constraints suggested by this article mean your annotations will take too long, then you will need to set up a BioPortal Virtual Applia8 KB (1,421 words) - 21:15, 7 February 2017
- ...rge repository of biomedical ontologies, terminologies, and ontology-based annotations. BioPortal is available at: http://bioportal.bioontology.org/. All content ...ab to search for term annotations or from the Resource Index tab to browse annotations for an individual term. This tool enables researchers to search for biomedi11 KB (1,718 words) - 18:15, 7 June 2022
- ...iption) an annotation has been produced. This information is used to score annotations.5 KB (669 words) - 19:16, 8 April 2013
- ...wn to a location on sequence, and be able to reason over the parts of gene annotations. To define the term gene in SO, we asked several questions. What is the ext3 KB (512 words) - 09:56, 10 August 2006
- The Resource index API is based on the web service that returns annotations from the Resource Index (called via a REST post). Additionally some simplif * To retrieve "annotations" either per element or per concept(s) : http://rest.bioontology.org/resourc38 KB (4,789 words) - 16:43, 7 November 2014
- ...ation created in Laboratree would also have corresponding ontology concept annotations. Researchers working on [http://rctbank.ucsf.edu/ Trialbank] create annotations for HIV/AIDS clinical trials in order to provide a Web application for visu6 KB (751 words) - 16:54, 18 August 2010
- The properties that link the annotations and the objects that they annotate: ...roperty(Names.ANNOTATES_BY_VIRTUAL_ID_PROPERTY); // property that links an annotations to the virtual id of an ontology ora conccept that it annotates15 KB (1,782 words) - 10:55, 17 October 2008
- ...-4pm</b> Possible future directions (formal relation ontologies, composed annotations, image annotation with ontologies) <b>[Stanford]</b>2 KB (284 words) - 15:04, 1 December 2014
- * Users can now exclude the annotations created with synonym terms. * Users can now exclude the annotations less than a certain length.8 KB (1,196 words) - 14:04, 24 February 2010
- ...of data text to annotate it with relevant ontology concepts and return the annotations. ...National Center for Biomedical Ontology (NCBO) BioPortal] ontologies. Such annotations facilitate translational discoveries by integrating annotated data.6 KB (744 words) - 19:49, 7 February 2017
- # The '''Protégé Changes ontology''' provides the definitions for generic annotations (the <tt>Annotation</tt> class) and ontology components that they annotate. ...y''' provides several key classes for representing ontology components and annotations and we extend these classes with several classes and properties relevant to28 KB (4,399 words) - 12:53, 9 September 2010
- Bug #560: The term "Element" in the resource tab must be replaced by "Annotations"3 KB (509 words) - 19:18, 11 December 2008
- ...heme. It is recommended to declare a owl:Ontology, especially for metadata annotations. This section shows the two concepts and a few typical annotations about those concepts. The first rdf:Description line of each group names th9 KB (1,291 words) - 03:17, 18 September 2020
- - tool support for creating phenotype descriptions ("annotations") and storing them4 KB (603 words) - 23:30, 22 April 2008
- ...ab-delimited format or as a set of RDF instances of the Protégé Change and Annotations ontology. See, for example, the details for the [http://bioportal.bioontolo ** Search through all resource annotations available in the NCBO Resource index9 KB (1,414 words) - 20:23, 10 May 2009
- ...or service to obtain all the annotations for the input and then uses those annotations to compute a coverage score for each ontology. ...the input data’s domain? It is calculated using the number and type of the annotations done with the ontology and the position of each annotated class in the onto18 KB (2,946 words) - 14:24, 29 March 2024
- ...ource for plant structure and development stages controlled vocabulary and annotations".4 KB (588 words) - 06:52, 6 January 2012
- ...data mining, pathway analysis, and other systems biology approaches. These annotations allow human TLR proteins, the complexes they form, and the functions they m ::Incorporating annotations into the analysis workflow - examples using Cytobank and NCBO's BioPortal18 KB (2,421 words) - 12:45, 12 April 2013
- * get an id for the new term right away so that they can use this id in their annotations.10 KB (1,495 words) - 17:53, 15 January 2010
- ...rce for plant structure and developmental stages controlled vocabulary and annotations." Nucleic Acids ...opment and application of methods to streamline and enhance the quality of annotations, manage website content, set project milestones, organize and moderate mont26 KB (3,702 words) - 20:02, 22 July 2009
- *Limited temporal annotations14 KB (1,993 words) - 14:19, 17 August 2007
- * (future implementation) Structured annotations with user-defined structure25 KB (3,199 words) - 15:06, 22 March 2013
- | CDISCglossary||computer||markup. Computer-processable annotations within a multimedia document. NOTE: In the context of the HL7specification,110 KB (15,252 words) - 12:03, 6 July 2007